Journals: 

[1] Wu Li, Jiangtao Liu, Frank Skidmore, Yijun Liu, Jie Tian*, Kuncheng Li. White Matter Microstructure Changes in the Thalamus in Parkinson Disease with Depression:A Diffusion Tensor MR Imaging Study. American Journal of Neuroradiology, Vol.31, No.10, pp.1861-1866, 2010. [PDF]

[2] Jian Chen, Jie Tian*, Noah Lee, Jian Zheng, R. Theodore Smith, and Andrew F. Laine. A partial intensity invariant feature descriptor for multimodal retinal image registration. IEEE Transactions on Biomedical Engineering, Vol.57, No.7, pp.1707-1718, 2010. [PDF]

[3] Guorui Yan, Jie Tian*, Shouping Zhu, Chenghu Qin, Yakang Dai, Fei Yang, Di Dong, and Ping Wu. Fast Katsevich algorithm based on GPU for helical cone-beam computed tomography. IEEE Transactions on Information Technology in Biomedicine, Vol. 14, No. 4, pp.1053-1061, 2010. [PDF]

[4] Yakang Dai, Jie Tian*, Jian Zheng, Guorui Yan. Real-time visualized freehand 3D ultrasound reconstruction based on GPU, IEEE Transactions on Information Technology in Biomedicine, Vol.14, No.6, pp.1338-1345, 2010. 

[5] Dong Han, Xin Yang, Kai Liu, Chenghu Qin, Bo Zhang, Xibo Ma, and Jie Tian*. Efficient reconstruction method for L1 regularization in fluorescence molecular tomography. Applied Optics, Vol.49, No.36, pp.6930-6937, 2010. 

[6] Lijun Bai, Jie Tian*, Chongguang Zhong, Ting Xue, Youbo you, Zhenyu Liu, Peng Chen, Qiyong Gong, Lin Ai, Wei Qin, Jianping Dai, Yijun Liu*. Acupuncture modulates temporal neural responses in wide brain networks: evidence from fMRI study.  Molecular Pain, Vol.6, No.1, pp.73, 2010. [PDF

[7] Zhenhua Hu, Jimin Liang, Weidong Yang, Weiwei Fan, Congye Li, Xiaowei Ma, Xueli Chen, Xiaopeng Ma, Xiangsi Li, Xiaochao Qu, Jing Wang, Feng Cao, and Jie Tian*, Experimental Cerenkov luminescence tomography of the mouse model with SPECT imaging validation, Optics Express, Vol.18, No.24, pp.24441-24450, 2010. [PDF

[8] Xiaowei He, Jimin Liang, Xiaorui Wang, Jingjing Yu, Xiaochao Qu, Xiaodong Wang, Yanbin Hou, Duofang Chen, Fang Liu, and Jie Tian*. Sparse reconstruction for quantitative bioluminescence tomography based on the incomplete variables truncated conjugate gradient method, Optics Express, Vol.18, No.24, pp.24825-24841, 2010. 

[9] Yanshuang Ren, Lijun Bai, Yuanyuan Feng, Jie Tian*, Kuncheng Li*, Investigation of acupoint specificity by functional connectivity analysis based on graph theory, Neuroscience Letters, Vol. 482, No. 2, pp. 95-100, 2010. 

[10] Junting Liu, Duofang Chen, Xiangsi Li, Xiaopeng Ma, Haichao Chen, Weiwei Fan, Fu Wang, Xiaochao Qu, Jimin Liang, Feng Cao, and Jie Tian*. In vivo quantitative reconstruction studies of bioluminescence tomography: effects of peak wavelength shift and model deviation. IEEE Transactions on Biomedical Engineering, Vol.57, No.10, pp.2579-2582,2010.[PDF]

[11] Xueli Chen, Xinbo Gao, Duofang Chen, Xiaopeng Ma, Xiaohui Zhao, Man Shen, Xiangsi Li, Xiaochao Qu, Jimin Liang, Jorge Ripoll, and Jie Tian*, 3D reconstruction of light flux distribution on arbitrary surfaces from 2D multi-photographic images, Optics Express, Vol.18, No.19, pp.19876-19893, 2010. [PDF]

[12] Xueli Chen, Xinbo Gao, Xiaochao Qu, Duofang Chen, Xiaopeng Ma, Jimin Liang, and Jie Tian*, A generalized free-space diffuse photon transport model based on the influence analysis of camera lens diaphragm, Applied Optics, Vol.49, No.29, pp.5654-5664, 2010. 

[13] Bo Zhang, Xiang Yang, Fei Yang, Xin Yang, Chenghu Qin, Dong Han, Xibo Ma, Kai Liu, and Jie Tian*, The CUBLAS and CULA based GPU acceleration of adaptive finite element framework for bioluminescence tomography, Optics Express, Vol.18, No.19, pp.20201-20214, 2010. [PDF]

[14] Kai Liu, Yujie Lu, Jie Tian*, Chenghu Qin, Xin Yang, Shouping Zhu, Xiang Yang, Quansheng Gao, and Dong Han, Evaluation of the simplified spherical harmonics approximation in bioluminescence tomography through heterogeneous mouse models, Optics Express, Vol.18, No.20, pp.20988-21002, 2010. 

[15] Junting Liu, Yabin Wang, Xiaochao Qu, Xiangsi Li, Xiaopeng Ma, Runqiang Han, Zhenhua Hu, Xueli Chen, Dongdong Sun, Rongqing Zhang, Duofang Chen, Dan Chen, Xiaoyuan Chen, Jimin Liang, Feng Cao, and Jie Tian*. In vivo quantitative bioluminescence tomography using heterogeneous and homogeneous mouse models. Optics Express, Vol.18, No.12, pp.13102-13113, 2010. 

[16] Xing Zhang, Jie Tian*, Kexin Deng, Yongfang Wu, and Xiuli Li. Automatic Liver Segmentation Using a Statistical Shape Model with Optimal Surface Detection. IEEE Transactions on Biomedical Engineering, Vol.57, No.10, pp.2622-2626, 2010. [PDF]

[17] Dong Han, Jie Tian*, Kai Liu, Jinchao Feng, Bo Zhang, Xibo Ma, and Chenghu Qin. Sparsity-promoting tomographic fluorescence imaging with simplified spherical harmonics approximation. IEEE Transactions on Biomedical Engineering, Vol.57, No.10, pp.2564-2567, 2010. 

[18] Jizheng Zhao, Jiangang Liu, Jun Li, Jimin Liang, Lu Feng, Jie Tian*. Inversion effect in the visual processing of Chinese character: an fMRI study. Neuroscience Letters, Vol.478, No.2, pp.107-111, 2010. [PDF]

[19] Yanshuang Ren, Lijun Bai, Yuanyuan Feng, Jie Tian*, Kuncheng Li*, Investigation of acupoint specificity by functional connectivity analysis based on graph theory, Neuroscience Letters, Vol. 482, No. 2, pp. 95-100, 2010. [PDF]

[20] Jixin Liu, Wei Qin, Qian Guo, Jinbo Sun, Kai Yuan, Peng Liu, Yi Zhang, Karen M. von Deneen, Yijun Liu, Jie Tian*. Distinct brain networks for time-varied characteristics of acupuncture. Neuroscience Letters, Vol.468, No.3, pp.353-358, 2010. 

[21] Kai Liu, Jie Tian*, Xin Yang, Yujie Lu, Chenghu Qin, Shouping Zhu, Xing Zhang. A fast bioluminescent source localization method based on generalized graph cuts with mouse model validations. Optics Express, Vol.18, No.4, pp.3732-3745, 2010.

[22] Lijun Bai, Hao Yan, Jie Tian*, Linling Li. Neural specificity of acupuncture stimulation at PC6: evidence from an fMRI study. Journal of Magnetic Resonance Imaging, Vol.31, pp.71-77, 2010. 

[23] Linling Li, Wei Qin, Lijun Bai, Jie Tian*. Exploring vision-related acupuncture point specificity with multi-voxel pattern analysis. Magnetic Resonance Imaging. Vol.28, No.3, pp.380-387, 2010. [PDF]

[24] Nunu Ren, Jimin Liang, Xiaochao Qu, Jianfeng Li, Bingjia Lu, and Jie Tian*. GPU-based Monte Carlo simulation for light propagation in complex heterogeneous tissues. Opt. Express, Vol.18, No.7, pp.6811-6823, 2010. 

[25] Bo Zhang, Xin Yang, Chenghu Qin, Dan Liu, Shouping Zhu, Jinchao Feng, Li Sun, Kai Liu, Dong Han, Xibo Ma, Xing Zhang, Jianghong Zhong, Xiuli Li, Xiang Yang, and Jie Tian*. A trust region method in adaptive finite element framework for bioluminescence tomography. Opt. Express, Vol.18, No.7, pp.6477-6491, 2010. 

[26] Dong Han, Jie Tian*, Shouping Zhu, Jinchao Feng, Chenghu Qin, Bo Zhang, and Xin Yang. A fast reconstruction algorithm for fluorescence molecular tomography with sparsity regularization. Optics Express, Vol.18, No.8, pp.8630-8646, 2010. 

[27] Kai Liu, Xin Yang, Dan Liu, Chenghu Qin, Junting Liu, Zhijun Chang, Min Xu and Jie Tian*. Spectrally resolved three dimensional bioluminescence tomography with a level set strategy. Journal of the Optical Society of America A, Vol.27, No.6, pp.1413-1423, 2010. [PDF]

[28] Jun Li, Jiangang Liu, Jimin Liang, Hongchuan Zhang, Jizheng Zhao, Cory A. Rieth, David E. Huber, Wu Li, Guangming Shi, Lin Ai, Jie Tian*, and Kang Lee. Effective connectivities of cortical regions for top-down face processing: A dynamic causal modeling study. Brain Research, Vol.1340, pp.40-51, 2010. [PDF]

[29] Kai Yuan, Wei Qin, Jixin Liu, Qian Guo, Minghao Dong, Jinbo Sun, Yi Zhang, Peng Liu, Wei Wang, Yarong Wang, Qiang Li, Weichuan Yang, Karen M von Deneen, Mark S Gold, Yijun Liu, and Jie Tian*. Altered small-world brain functional networks and duration of heroin use in male abstinent heroin-dependent individuals. Neuroscience Letters, Vol.477, No.1, pp.37-42, 2010. 

[30] Kai Yuan, Wei Qin, Minghao Dong, Jixin Liu, Peng Liu, Yi Zhang, Jinbo Sun, Wei Wang, Yarong Wang, Qiang Li, Weichuan Yang, Jie Tian*. Combining spatial and temporal information to explore resting-state networks changes in abstinent heroin-dependent individuals. Neuroscience letters, Vol.475, No.1, pp.20-24, 2010. 

[31] Peng Liu, Guangyu Zhou, Yi Zhang, Minghao Dong, Wei Qin, Kai Yuan, Jinbo Sun, Jixin Liu, Jimin Liang, Karen M. von Deneen, Yijun Liu, and Jie Tian*. The hybrid GLM-ICA investigation on the neural mechanism of acupoint ST36: an fMRI study. Neuroscience Letters, Vol.479, No.3, pp.267-271, 2010. [PDF]

[32] Chenghu Qin, Shouping Zhu, and Jie Tian*, New optical molecular imaging systems, Curr. Pharm. Biotechnol. Vol.11, No.6, pp. 620-627, 2010. [PDF]

[33] Heyu Huang, Xiaochao Qu, Jimin Liang, Xiaowei He, Xueli Chen, Da’an Yang, Jie Tian*. A multi-phase level set framework for source reconstruction in bioluminescence tomography. Journal of Computational Physics, Vol.229, No.13, pp.5246-5256, 2010. [PDF]

[34] Kai Yuan, Wei Qin, Minghao Dong, Jixin Liu, Jinbo Sun, Peng Liu, Yi Zhang, Wei Wang, Yarong Wang, Qiang Li, Liyan Zhao, Karen M. von Deneen, Yijun Liu, Mark S.Gold, Jie Tian*, Gray matter deficits and resting-state abnormalities in abstinent heroin-dependent individuals, Neuroscience Letters, Vol. 482, No. 2, pp. 101-105, 2010. 

[35] Jiangang Liu, Jun Li, Hongchuan Zhang, Cory A Rieth, David E Huber, Kang Lee, and Jie Tian*. Neural correlates of top-down letter processing. Neuropsychologia, Vol.48, No.2, pp.636-641, 2010. 

[36] Kuan Peng, Xinbo Gao, Jimin Liang, Xiaochao Qu, Nunu Ren, Xueli Chen, Bin Ma, and Jie Tian*. Study on Photon Transport Problem Based on the Platform of Molecular Optical Simulation Environment. International Journal of Biomedical Imaging, Volume 2010, Article ID 913434, 9 pages, doi: 10.1155/2010/913434, 2010. [PDF]

[37] Xueli Chen, Xinbo Gao, Xiaochao Qu, Duofang Chen, Bin Ma, Lin Wang, Kuan Peng, Jimin Liang, Jie Tian*. Qualitative Simulation of Photon Transport in Free-Space Based on Monte Carlo Method and Its Parallel Implementation. International Journal of Biomedical Imaging, 2010, Volume 2010, Article ID 650298, 9 pages doi: 10.1155/2010/650298, 2010. 

[38] Xiaowei He, Jimin Liang, Xiaochao Qu, Heyu Huang, Yanbin Hou, Jie Tian*. Truncated Total Least SquaresMethod with a Practical Truncation Parameter Choice Scheme for Bioluminescence Tomography Inverse Problem. International Journal of Biomedical Imaging, Volume 2010, Artical ID 291874, 11 pages, doi:10.1155/2010/291874, 2010. 

[39] Kexin Deng, Jie Tian, Jian Zheng, Xing Zhang, Xiaoqian Dai, and Min Xu. Retinal Fundus Image Registration via Vascular Structure Graph Matching. International Journal of Biomedical Imaging, Volume 2010, Artical ID 906067, 13 pages, doi:10.1155/2010/906067, 2010. 

[40] Xiaowei He, Yanbin Hou, Duofang Chen, Yuchuang Jiang, Man Shen, Junting Liu, Qitan Zhang and Jie Tian*, Sparse regularization based reconstruction for bioluminescence tomography using a multilevel adaptive finite element method, International Journal of Biomedical Imaging, Volume 2011, Article ID 203537, 11 pages doi:10.1155/2011/203537, 2010. [PDF]

Conference proceedings: 

[1] Jian Zheng, Jie Tian*, Yakang Dai, Xing Zhang, Di Dong, Min Xu. Ultrasound-directed Robotic System for Thermal Ablation of Liver Tumors: a Preliminary Report, Proceedings of SPIE Symposium on Medical Imaging 2010, San Diego, California, USA, February 13-18, 2010. (Oral report)

[2] Jinchao Feng, Kebin Jia, Jie Tian*, Chenghu Qin and Shouping Zhu, Limited-memory-BFGS-based Iterative Algorithm for Multispectral Bioluminescence Tomography with Huber regularization, Proceedings of SPIE Symposium on Medical Imaging 2010, San Diego, California, USA, February 13-18, 2010. (Oral report)

[3] Bo Zhang, Jie Tian*, Dan Liu, Li Sun, Xin Yang and Dong Han, A Multi-thread based New Sparse Matrix Method in Bioluminescence Tomography, Proceedings of SPIE Symposium on Medical Imaging 2010, San Diego, California, USA, February 13-18, 2010. (Oral report)

[4] Xing Zhang, Jie Tian*, Dehui Xiang, Yongfang Wu, Interactive segmentation method with graph cut and SVM, Proceedings of SPIE Symposium on Medical Imaging 2010, San Diego, California, USA, February 13-18, 2010. 

[5] Xiaoqian Dai, Jie Tian*, Zhe Chen. Improved Estimation of Parametric Images of Cerebral Glucose Metabolic Rate from Dynamic FDG-PET Using Volume-Wise Principle Component Analysis, Proceedings of SPIE Symposium on Medical Imaging 2010, San Diego, California, USA, February 13-18, 2010. (Oral report)

[6] Xiaoqian Dai, Jie Tian*, Zhe Chen. Performance Evaluation of the Non-Linear and Linear Estimation Methods for Determining Kinetic Parameters in dynamic FDG-PET study, Proceedings of SPIE Symposium on Medical Imaging 2010, San Diego, California, USA, February 13-18, 2010. (Oral report)

[7] Li Sun, Pu Wang, Jie Tian*, Bo zhang, Dong Han, Xin Yang, Modelling bioluminescent photon transport in tissue based on Radiosity-Diffusion model, Proceedings of SPIE Symposium on Medical Imaging 2010, San Diego, California, USA, February 13-18, 2010. (Oral report)

[8] Kai Liu, Jie Tian*, Shouping Zhu, Chenghu Qin, Xing Zhang, Dong Han, Fast Localize the Bioluminescent Source via Graph Cuts. 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Rotterdam Netherlands, April 14-17, 2010. (Oral report)

[9] Dong Han, Bo Zhang, Qiujuan Gao, Kai Liu and Jie Tian*. Sparsity-Promoting Fluorescence Molecular Tomography with Iteratively Reweighted Regularization, International Conference of the IEEE Engineering in Medicine and Biology Society 2010, Buenos Aires, Argentina, August 31-September 4, 2010.

[10] Kai Liu, Jie Tian*, Xin Yang, Chenghu Qin, Shouping Zhu, Dong Han, and Xibo Ma. An Efficient Global Inexact Newton Method Regularized by a Dynamic Sparse Term for In Vivo Tomographic Bioluminescence Imaging, International Conference of the IEEE Engineering in Medicine and Biology Society 2010, Buenos Aires, Argentina, August 31-September 4, 2010.

[11] Jianghong Zhong, Jie Tian*, Xin Yang, Chenghu Qin. Global Solution of the Finite Element Shape-from-Shading Model with a Bioluminescent Molecular Imaging Application. International Conference of the IEEE Engineering in Medicine and Biology Society 2010, BuenosAires, Argentina, August 31- September 4, 2010. 

[12] Xing Zhang, Jie Tian*, Kexin Deng, Yongfang Wu and Xiuli Li. Automatic Liver Segmentation from CT Scans Based on a Statistical Shape Model, International Conference of the IEEE Engineering in Medicine and Biology Society 2010, Buenos Aires Sheraton Hotel, Buenos Aires, Argentina, August 31- September 4, 2010.